Tools for generating & working w/protein alignments (Clustal, BLAST, JalView, EPSpript, & ENDscript)

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Loading protein sequences and alignments into Jalview Loading protein sequences and alignments into Jalview
Multiple Sequence Alignment and Analysis with Jalview Multiple Sequence Alignment and Analysis with Jalview
JPRED video 2: Submitting a protein multiple sequence alignment for secondary structure prediction JPRED video 2: Submitting a protein multiple sequence alignment for secondary structure prediction
How to Use BLAST for Finding and Aligning DNA or Protein Sequences How to Use BLAST for Finding and Aligning DNA or Protein Sequences
Beginners Guide to Clustal Omega | Multiple Sequence Alignment Beginners Guide to Clustal Omega | Multiple Sequence Alignment
Colouring protein residues in an alignment using Jalview Colouring protein residues in an alignment using Jalview
Multiple Sequence Alignment services in Jalview (School of Life Sciences, University of Dundee) Multiple Sequence Alignment services in Jalview (School of Life Sciences, University of Dundee)
How to do mutiple sequence alignment using ClustalW. How to do mutiple sequence alignment using ClustalW.