Tutorial-9: Short-read alignment (Part-2) - whole pipeline, mark duplicates and flagstat

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Lecture 2 (Part 2) by Prof Geoff Barton on "How are multiple sequence alignments generated?" Lecture 2 (Part 2) by Prof Geoff Barton on "How are multiple sequence alignments generated?"
Identifying duplicate reads in RNA-Seq data using Picard.MarkDuplicates in GenePattern Identifying duplicate reads in RNA-Seq data using Picard.MarkDuplicates in GenePattern
5. Marking Duplicates 5. Marking Duplicates
Read alignment (3 of 5) Read alignment (3 of 5)
alvaMolecule - Duplicate analysis alvaMolecule - Duplicate analysis
Metabarcoding analysis pipeline with dada2 Metabarcoding analysis pipeline with dada2
2 Filter and trim reads with DADA2 2 Filter and trim reads with DADA2
JPRED video 2: Submitting a protein multiple sequence alignment for secondary structure prediction JPRED video 2: Submitting a protein multiple sequence alignment for secondary structure prediction